Stem-loop gra-MIR8643a

Accession

MI0027594

Description

Gossypium raimondii gra-MIR8643a precursor miRNA

Gene family

MIPF0002008; MIR8643

Sequence

augucuuuuaACAUAUUAAGAAGUCGAAUUGacaaugaagaaagaaguaggaagccgaaaagccaucauugccuauaaucaaaacccauaaacccguaccaugauucuuucuucacugccaauucgacuuccugauauguuaaaagaaau
...(((((((((((((((.((((((((((((.((.((((((((((((((((.....((.......))....)))))............................))))))))))).)).)))))))))))).)))))))))))))))...

Structure

aug               A            a  a           ----------------------------     aagcc  aa 
   ucuuuuaACAUAUUA GAAGUCGAAUUG ca ugaagaaagaa                            guagg     ga  a
   ||||||||||||||| |||||||||||| || |||||||||||                            |||||     ||  g
   agaaaauuguauagu cuucagcuuaac gu acuucuuucuu                            uaucc     cu  c
uaa               c            c  c           aguaccaugcccaaauacccaaaacuaa     -guua  ac 

Annotation confidence Not enough data

Genome context

chr2: 23366322-23366471 [-]

Mature gra-miR8643a

• Accession: MIMAT0033999
• Description: Gossypium raimondii gra-miR8643a mature miRNA
• Sequence: 11 - ACAUAUUAAGAAGUCGAAUUG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629