miRBase entry: cfa-mir-889

Stem-loop cfa-mir-889

Accession

MI0027984

Description

Canis familiaris cfa-mir-889 precursor miRNA

Sequence

caagcucuucuggauggugcaguucuuuggugcuuaaagaaugguuguccguaguauggucucuauauucauggugaUUAAUAUCGGACAACCAUUGUUuuaguauccaacuuugcuucaaaaguucucccaagcacgc
...(((.....((((..((.(((...((((((((.(((.((((((((((((..((.(((((.((((....)))).)))))))..)))))))))))).))).)))).))))....))).))...)))).....)))....

Structure

-caa   cuucu    -gg  c   -ucu    -    u   g            ua  a     u    a 
    gcu     ggau   ug agu    uugg ugcu aaa aaugguuguccg  gu ugguc cuau u
    |||     ||||   || |||    |||| |||| ||| ||||||||||||  || ||||| ||||  
    cga     cuug   ac ucg    aacc auga uUU UUACCAACAGGC  UA AUUag ggua u
cgca   acccu    aaa  u   uuuc    u    u   G            UA  -     u    c

Annotation confidence Not enough data

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Genome context

chr8: 69276842-69276980 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from cfa-mir-889

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-889

Accession	MIMAT0034387
Description	Canis familiaris cfa-miR-889 mature miRNA
Sequence	78 - UUAAUAUCGGACAACCAUUGUU - 99
Evidence	experimental Illumina [1]

References

PubMed ID: 24692655
Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
"Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
"Mol Biol Evol (2014) 31:1536-1545