miRBase entry: cfa-mir-449b

Stem-loop cfa-mir-449b

Accession

MI0028007

Description

Canis familiaris cfa-mir-449b precursor miRNA

Sequence

gccaugaaacguagccgugaccugagucagguaggcaguguauuguuagcuggcugcuuugggucaaucuggCAGCCACCACUACCCUGCCACUugcuucuggacaaauucuucucauuaacaggcugc
..........((((((((((((.(((.(((((.(((((.(((.((...(.((((((((..((.....)).))))))))))).))).)))))))))).))).))...........)))).....))))))

Structure

gccaugaaac      -----    -----------  u   u     a     u   u  uua c        uu  g 
          guagcc     guga           cc gag caggu ggcag gua ug   g uggcugcu  gg u
          ||||||     ||||           || ||| ||||| ||||| ||| ||   | ||||||||  || c
          cgucgg     uacu           gg cuu guUCA CCGUC CAU AC   C ACCGACgg  cu a
----------      acaau    cuucuuaaaca  u   c     -     C   C  --- -        -u  a

Annotation confidence Not enough data

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Genome context

chr2: 42542049-42542177 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-449b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-449b

Accession	MIMAT0034406
Description	Canis familiaris cfa-miR-449b mature miRNA
Sequence	73 - CAGCCACCACUACCCUGCCACU - 94
Evidence	experimental Illumina [1]

References

PubMed ID: 24692655
Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
"Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
"Mol Biol Evol (2014) 31:1536-1545