miRBase entry: cfa-mir-8908a-1

Stem-loop cfa-mir-8908a-1

Accession

MI0028030

Description

Canis familiaris cfa-mir-8908a-1 precursor miRNA

Sequence

cccugaacaacauccgucuucccgggugaugugugcagugcucUGCUGAGGAAGGUGCUCAUUGCAUUcauucauaagagUAAUUAGGACCUCCCUGAGCGGAGUaaugcucaccugaaggacgucugcguugucuuacggagcg
((.((((((((.(.((((((..(((((((.....(((.(((((((((.(((.((((.((.(((((..((........))))))).)).)))).))).))))))))).)))))))))).))))))...).))))).))).))....

Structure

----  c   -     a --c      cc       ugugu   g         G   A    G  C     AU  auu 
    cc uga acaac u   cgucuu  cggguga     gca ugcucUGCU AGG AGGU CU AUUGC  Uc   c
    || ||| ||||| |   ||||||  |||||||     ||| ||||||||| ||| |||| || |||||  ||    
    gg auu uguug g   gcagga  guccacu     cgu aUGAGGCGA UCC UCCA GA UAAUg  ag   a
gcga  c   c     c ucu      -a       -----   a         G   C    G  U     --  aau

Annotation confidence Not enough data

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Genome context

chrX: 114684058-114684202 [-]

Clustered miRNAs

9 other miRNAs are < 10 kb from cfa-mir-8908a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-8908a-5p

Accession	MIMAT0034428
Description	Canis familiaris cfa-miR-8908a-5p mature miRNA
Sequence	44 - UGCUGAGGAAGGUGCUCAUUGCAUU - 68
Evidence	experimental Illumina [1]

Mature cfa-miR-8908a-3p

Accession	MIMAT0034429
Description	Canis familiaris cfa-miR-8908a-3p mature miRNA
Sequence	81 - UAAUUAGGACCUCCCUGAGCGGAGU - 105
Evidence	experimental Illumina [1]

References

PubMed ID: 24692655
Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
"Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
"Mol Biol Evol (2014) 31:1536-1545