miRBase entry: cfa-mir-8908a-2

Stem-loop cfa-mir-8908a-2

Accession

MI0028034

Description

Canis familiaris cfa-mir-8908a-2 precursor miRNA

Sequence

cccuggacaacauccgucuucccgcguaacguguguagugcucugcugaggaaggugcugguugcauucauucauaagagUAAUUAGGACCUCCCUGAGCGGAGUaaugcucaccugaaggacgucugcagugucauccggagcg
..(((((..((((.((((((.(.(......(((.(((.(((((((((.(((.((((.((((((((..((........)))))))))).)))).))).))))))))).))).)))).).))))))......))))..)))))....

Structure

--cc     ca    -----c      c c cguaac   u   g         g   a    g        au  auu 
    cugga  acau      cgucuu c g      gug gua ugcucugcu agg aggu cugguugc  uc   c
    |||||  ||||      |||||| | |      ||| ||| ||||||||| ||| |||| ||||||||  ||    
    ggccu  ugug      gcagga g c      cac cgu aUGAGGCGA UCC UCCA GAUUAAUg  ag   a
gcga     ac    acgucu      a u ------   u   a         G   C    G        --  aau

Annotation confidence Not enough data

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Genome context

chrX: 114686988-114687132 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from cfa-mir-8908a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-8908a-3p

Accession	MIMAT0034429
Description	Canis familiaris cfa-miR-8908a-3p mature miRNA
Sequence	81 - UAAUUAGGACCUCCCUGAGCGGAGU - 105
Evidence	experimental Illumina [1]

References

PubMed ID: 24692655
Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
"Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
"Mol Biol Evol (2014) 31:1536-1545