miRBase entry: cfa-mir-8908a-3

Stem-loop cfa-mir-8908a-3

Accession

MI0028038

Description

Canis familiaris cfa-mir-8908a-3 precursor miRNA

Sequence

cccugaacaauauccgucuucccgcguaacguguguagugcucUGCUGAGGAAGGUGCUCAUUGCAUUcauucauaagagUAAUUAGGACCUCCCUGAGCGGAGUaaugcucaccugaaguacgucugcggugucuucuggagcg
.((.(((..(((.((((......(((((..(((.(((.(((((((((.(((.((((.((.(((((..((........))))))).)).)))).))).))))))))).))).)))......)))))..))))))).))).))....

Structure

---c  u   ca   u    cuuccc     ----ac   u   g         G   A    G  C     AU  auu 
    cc gaa  aua ccgu      gcgua      gug gua ugcucUGCU AGG AGGU CU AUUGC  Uc   c
    || |||  ||| ||||      |||||      ||| ||| ||||||||| ||| |||| || |||||  ||    
    gg cuu  ugu ggcg      ugcau      cac cgu aUGAGGCGA UCC UCCA GA UAAUg  ag   a
gcga  u   -c   -    ----uc     gaaguc   u   a         G   C    G  U     --  aau

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chrX: 114689771-114689915 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from cfa-mir-8908a-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-8908a-5p

Accession	MIMAT0034428
Description	Canis familiaris cfa-miR-8908a-5p mature miRNA
Sequence	44 - UGCUGAGGAAGGUGCUCAUUGCAUU - 68
Evidence	experimental Illumina [1]

Mature cfa-miR-8908a-3p

Accession	MIMAT0034429
Description	Canis familiaris cfa-miR-8908a-3p mature miRNA
Sequence	81 - UAAUUAGGACCUCCCUGAGCGGAGU - 105
Evidence	experimental Illumina [1]

References

PubMed ID: 24692655
Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
"Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
"Mol Biol Evol (2014) 31:1536-1545