miRBase entry: cpi-let-7a-4

Stem-loop cpi-let-7a-4

Accession

MI0029374

Description

Chrysemys picta cpi-let-7a-4 precursor miRNA

Sequence

uggaggUGAGGUAGUAGGUUGUAUAGUUuggugggagggauuucaucccauuucaggugauaaCUAUACAGUCUAUUGCCUUCCuuaaag
..((((.(((((((((((((((((((((...((((((((((...))))).)))))......)))))))))))))))))))))))))....

Structure

--ug    U                     ---ugg     -     u 
    gagg GAGGUAGUAGGUUGUAUAGUU      uggga gggau  
    |||| |||||||||||||||||||||      ||||| ||||| u
    uuCC UUCCGUUAUCUGACAUAUCaa      acuuu cccua  
gaaa    -                     uagugg     a     c

Annotation confidence Not enough data

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Genome context

chr4: 2386302-2386391 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-let-7a-4

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-let-7a-5p

Accession	MIMAT0037594
Description	Chrysemys picta cpi-let-7a-5p mature miRNA
Sequence	7 - UGAGGUAGUAGGUUGUAUAGUU - 28
Evidence	experimental Illumina [1]

Mature cpi-let-7a-4-3p

Accession	MIMAT0037597
Description	Chrysemys picta cpi-let-7a-4-3p mature miRNA
Sequence	64 - CUAUACAGUCUAUUGCCUUCC - 84
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196