miRBase entry: cpi-let-7c-1

Stem-loop cpi-let-7c-1

Accession

MI0029376

Description

Chrysemys picta cpi-let-7c-1 precursor miRNA

Sequence

gugugcauccggguUGAGGUAGUAGGUUGUAUGGUUuagaguuacacccugggaguuaaCUGUACAACCUUCUAGCUUUCCuuggagcacacuuggg
((((((.((((((..(((.(((.(((((((((((((..((.(..((...))..).))))))))))))))).))).)))..)))))))))))).....

Structure

-----      a      uU   G   U             ua  g ua  c 
     gugugc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  ca  
     |||||| ||||||  ||| ||| |||||||||||||  || |  || c
     cacacg agguuC  UUC AUC UCCAACAUGUCaa  uu a  gu  
ggguu      -      CU   G   U             --  g gg  c

Annotation confidence Not enough data

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Genome context

KK088228.1: 9003448-9003544 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-let-7c-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-let-7c-5p

Accession	MIMAT0037599
Description	Chrysemys picta cpi-let-7c-5p mature miRNA
Sequence	15 - UGAGGUAGUAGGUUGUAUGGUU - 36
Evidence	experimental Illumina [1]

Mature cpi-let-7c-3p

Accession	MIMAT0037600
Description	Chrysemys picta cpi-let-7c-3p mature miRNA
Sequence	60 - CUGUACAACCUUCUAGCUUUCC - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196