miRBase entry: cpi-let-7c-2

Stem-loop cpi-let-7c-2

Accession

MI0029377

Description

Chrysemys picta cpi-let-7c-2 precursor miRNA

Sequence

ugcgugccccaggcUGAGGUAGUAGGUUGUAUGGUUuagaauaacacccgcaggagauaaCUGUACAGCCUCCUAGCUUUCCcuggggcgcugcuuag
.((((((((((((..(((.(((.(((((((((((((......................))))))))))))).))).)))..)))))))))).))....

Structure

---u  -          cU   G   U             uagaauaaca 
    gc gugccccagg  GAG UAG AGGUUGUAUGGUU          c
    || ||||||||||  ||| ||| |||||||||||||           
    cg cgcggggucC  UUC AUC UCCGACAUGUCaa          c
gauu  u          CU   G   C             uagaggacgc

Annotation confidence Not enough data

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Genome context

KK083354.1: 288926-289023 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-let-7c-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-let-7c-5p

Accession	MIMAT0037599
Description	Chrysemys picta cpi-let-7c-5p mature miRNA
Sequence	15 - UGAGGUAGUAGGUUGUAUGGUU - 36
Evidence	experimental Illumina [1]

Mature cpi-let-7c-2-3p

Accession	MIMAT0037601
Description	Chrysemys picta cpi-let-7c-2-3p mature miRNA
Sequence	61 - CUGUACAGCCUCCUAGCUUUCC - 82
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196