miRBase entry: cpi-let-7d

Stem-loop cpi-let-7d

Accession

MI0029378

Description

Chrysemys picta cpi-let-7d precursor miRNA

Sequence

uaggaAGAGGUAGUAGGUUGCAUAGUUuuagggcagagauuuugcucacaaggaguuaaCUAUACAACCUGCUGCCUUUCUuagggcu
(((((.((((((((((((((.((((((...(((((((...)))))))..........)))))).))))))))))))))))))).....

Structure

-----     A              C      -------uua       g 
     uagga GAGGUAGUAGGUUG AUAGUU          gggcaga  
     ||||| |||||||||||||| ||||||          ||||||| a
     auUCU UUCCGUCGUCCAAC UAUCaa          cucguuu  
ucggg     -              A      uugaggaaca       u

Annotation confidence Not enough data

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Genome context

KK088242.1: 1331717-1331804 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-let-7d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-let-7d-5p

Accession	MIMAT0037602
Description	Chrysemys picta cpi-let-7d-5p mature miRNA
Sequence	6 - AGAGGUAGUAGGUUGCAUAGUU - 27
Evidence	experimental Illumina [1]

Mature cpi-let-7d-3p

Accession	MIMAT0037603
Description	Chrysemys picta cpi-let-7d-3p mature miRNA
Sequence	60 - CUAUACAACCUGCUGCCUUUCU - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196