miRBase entry: cpi-let-7e

Stem-loop cpi-let-7e

Accession

MI0029379

Description

Chrysemys picta cpi-let-7e precursor miRNA

Sequence

guccuugaggcUGAGGUAGUAGAUUGAAUAGUUguggaguccuacccucccuuugagcuaaCUAUACAAUCUACUGUCUUUccuaaggaga
.(((((.(((..((((((((((((((.((((((((((((.......))))......)).)))))).)))))))))))))).))))))))..

Structure

-g     g   cU              A      -  ------    uc 
  uccuu agg  GAGGUAGUAGAUUG AUAGUU gu      ggag  c
  ||||| |||  |||||||||||||| |||||| ||      ||||  u
  aggaa ucc  UUCUGUCAUCUAAC UAUCaa cg      ccuc  a
ag     -   -U              A      u  aguuuc    cc

Annotation confidence Not enough data

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Genome context

chr4: 2386096-2386186 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-let-7e

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-let-7e-5p

Accession	MIMAT0037604
Description	Chrysemys picta cpi-let-7e-5p mature miRNA
Sequence	12 - UGAGGUAGUAGAUUGAAUAGUU - 33
Evidence	experimental Illumina [1]

Mature cpi-let-7e-3p

Accession	MIMAT0037605
Description	Chrysemys picta cpi-let-7e-3p mature miRNA
Sequence	62 - CUAUACAAUCUACUGUCUUU - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196