miRBase entry: cpi-let-7f-1

Stem-loop cpi-let-7f-1

Accession

MI0029380

Description

Chrysemys picta cpi-let-7f-1 precursor miRNA

Sequence

ccgaggcccugggggaUGAGGUAGUAGAUUGUAUAGUUuuagggucacacccggucucggagauaacuauacagucuacugucuuucccg
(((......)))((((.(((((((((((((((((((((...((((...)))).((((...))))))))))))))))))))))))))))).

Structure

ccgaggcccugg    U                     ---------uua    c 
            ggga GAGGUAGUAGAUUGUAUAGUU            gggu  
            |||| |||||||||||||||||||||            |||| a
            cccu uucugucaucugacauaucaa            ccca  
-----------g    -                     uagaggcucugg    c

Annotation confidence Not enough data

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Genome context

KK083246.1: 398670-398759 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-let-7f-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-let-7f-5p

Accession	MIMAT0037606
Description	Chrysemys picta cpi-let-7f-5p mature miRNA
Sequence	17 - UGAGGUAGUAGAUUGUAUAGUU - 38
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196