Stem-loop cpi-mir-1a-1

Accession

MI0029384

Description

Chrysemys picta cpi-mir-1a-1 precursor miRNA

Sequence

cuaccugcuugagagACAUACUUCUUUAUAUGCCCAUAugaaccuggcaagcuaUGGAAUGUAAAGAAGUAUGUAUuucagguggggaucauu
...(((((((((((.((((((((((((((((..(((((..............))))).)))))))))))))))).))))))))))).......

Structure

----cua           g                GC     ugaacc 
       ccugcuugaga ACAUACUUCUUUAUAU  CCAUA      u
       ||||||||||| ||||||||||||||||  |||||       
       ggguggacuuU UGUAUGAAGAAAUGUA  GGUau      g
uuacuag           A                -A     cgaacg 

Annotation confidence Not enough data

Genome context

KK088178.1: 3459667-3459759 [+]

Mature cpi-miR-1a-5p

• Accession: MIMAT0037612
• Description: Chrysemys picta cpi-miR-1a-5p mature miRNA
• Sequence: 16 - ACAUACUUCUUUAUAUGCCCAUA - 38
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-1a-3p

• Accession: MIMAT0037613
• Description: Chrysemys picta cpi-miR-1a-3p mature miRNA
• Sequence: 55 - UGGAAUGUAAAGAAGUAUGUAU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196