miRBase entry: cpi-mir-1a-2

Stem-loop cpi-mir-1a-2

Accession

MI0029385

Description

Chrysemys picta cpi-mir-1a-2 precursor miRNA

Sequence

uccugcccagaguACAUACUUCUUUAUGUACCCAUAugaacauauaaugcuaUGGAAUGUAAAGAAGUAUGUAUuuuuggcaggcacug
.((((((.(((((((((((((((((((((..(((((..(........)..))))).))))))))))))))))))))).)))))).....

Structure

----u      c                     AC     ug aca 
     ccugcc agaguACAUACUUCUUUAUGU  CCAUA  a   u
     |||||| |||||||||||||||||||||  |||||  |    
     ggacgg uuuUAUGUAUGAAGAAAUGUA  GGUau  u   a
gucac      u                     -A     cg aau

Annotation confidence Not enough data

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Genome context

KK088180.1: 6518113-6518201 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-1a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-1a-3p

Accession	MIMAT0037613
Description	Chrysemys picta cpi-miR-1a-3p mature miRNA
Sequence	53 - UGGAAUGUAAAGAAGUAUGUAU - 74
Evidence	experimental Illumina [1]

Mature cpi-miR-1a-2-5p

Accession	MIMAT0037614
Description	Chrysemys picta cpi-miR-1a-2-5p mature miRNA
Sequence	14 - ACAUACUUCUUUAUGUACCCAUA - 36
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196