miRBase entry: cpi-mir-7a-2

Stem-loop cpi-mir-7a-2

Accession

MI0029388

Description

Chrysemys picta cpi-mir-7a-2 precursor miRNA

Sequence

uggccccgucccuuaUGGAAGACUAGUGAUUUUGUUguucuauagcucaucucaugaCAACAAGUCACAGUCUGCCUUauggugcauggccuccu
.((((..((.((.((.((.(((((.(((((((.((((((................)))))))))))))))))).)).)).)).))..))))....

Structure

---u    cc  c  u  U  A     A       U      cuauagc 
    ggcc  gu cc ua GG AGACU GUGAUUU GUUguu       u
    ||||  || || || || ||||| ||||||| ||||||        
    ccgg  cg gg aU CC UCUGA CACUGAA CAACag       c
uccu    ua  u  u  U  G     -       -      uacucua

Annotation confidence Not enough data

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Genome context

KK088241.1: 3107639-3107733 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-7a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-7a-5p

Accession	MIMAT0037617
Description	Chrysemys picta cpi-miR-7a-5p mature miRNA
Sequence	16 - UGGAAGACUAGUGAUUUUGUU - 36
Evidence	experimental Illumina [1]

Mature cpi-miR-7a-2-3p

Accession	MIMAT0037619
Description	Chrysemys picta cpi-miR-7a-2-3p mature miRNA
Sequence	58 - CAACAAGUCACAGUCUGCCUU - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196