miRBase entry: cpi-mir-15a

Stem-loop cpi-mir-15a

Accession

MI0029398

Description

Chrysemys picta cpi-mir-15a precursor miRNA

Sequence

ccuugggcuaacgUAGCAGCACAUAAUGGUUUGuggguuuugaaaaggugcaggccauauugugcugccucaaaaauacaagg
(((((.......(..((((((((..((((((((((.............))))))))))..))))))))..).......)))))

Structure

     ggcuaac UA        UA          gguuu 
ccuug       g  GCAGCACA  AUGGUUUGug     u
|||||       |  ||||||||  ||||||||||     g
ggaac       c  cgucgugu  uaccggacgu     a
     auaaaaa uc        ua          ggaaa

Annotation confidence Not enough data

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Genome context

chr1: 56259174-56259256 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-15a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-15a-5p

Accession	MIMAT0037631
Description	Chrysemys picta cpi-miR-15a-5p mature miRNA
Sequence	14 - UAGCAGCACAUAAUGGUUUG - 33
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196