miRBase entry: cpi-mir-16a

Stem-loop cpi-mir-16a

Accession

MI0029400

Description

Chrysemys picta cpi-mir-16a precursor miRNA

Sequence

cagcaguacauUAGCAGCACGUAAAUAUUGGCGuuaacucuguaaauaucuCCAGUAUUAACUGUGCUGCUGAaguaaagu
..((..(((.((((((((((((.((((((((.(................).)))))))).)).)))))))))).)))..))

Structure

ca  ag   a          -  A        C uuaacuc 
  gc  uac uUAGCAGCAC GU AAUAUUGG G       u
  ||  ||| |||||||||| || |||||||| |        
  ug  aug AGUCGUCGUG CA UUAUGACC c       g
--  aa   a          U  A        u uauaaau

Annotation confidence Not enough data

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Genome context

chr1: 56259040-56259120 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-16a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-16a-5p

Accession	MIMAT0037634
Description	Chrysemys picta cpi-miR-16a-5p mature miRNA
Sequence	12 - UAGCAGCACGUAAAUAUUGGCG - 33
Evidence	experimental Illumina [1]

Mature cpi-miR-16a-3p

Accession	MIMAT0037635
Description	Chrysemys picta cpi-miR-16a-3p mature miRNA
Sequence	52 - CCAGUAUUAACUGUGCUGCUGA - 73
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196