Stem-loop cpi-mir-18a

Accession

MI0029402

Description

Chrysemys picta cpi-mir-18a precursor miRNA

Sequence

ugcuuuuuguucUAAGGUGCAUCUAGUGCAGAuagugaaguagauuagcaucuACUGCCCUAAGUGCUCCUUCUGgcauaagaaguuau
.(((((((((.((((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).)))..))).)))))))))...

Structure

--u         u   --   U    C   U    A   -  aa u 
   gcuuuuugu cUA  AGG GCAU UAG GCAG uag ug  g a
   ||||||||| |||  ||| |||| ||| |||| ||| ||  | g
   ugaagaaua gGU  UCC CGUG AUC CGUC Auc ac  u a
uau         c   CU   U    A   C    -   u  ga u 

Annotation confidence Not enough data

Genome context

KK083096.1: 1397132-1397220 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpi-mir-18a

Mature cpi-miR-18a-5p

• Accession: MIMAT0037638
• Description: Chrysemys picta cpi-miR-18a-5p mature miRNA
• Sequence: 13 - UAAGGUGCAUCUAGUGCAGA - 32
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-18a-3p

• Accession: MIMAT0037639
• Description: Chrysemys picta cpi-miR-18a-3p mature miRNA
• Sequence: 54 - ACUGCCCUAAGUGCUCCUUCUG - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196