miRBase entry: cpi-mir-18b

Stem-loop cpi-mir-18b

Accession

MI0029403

Description

Chrysemys picta cpi-mir-18b precursor miRNA

Sequence

guuccuuguguUAAGGUGCAUCUAGUGCAGUUAgugaaguagcuuagaaucuACUGCCCUAAAUGCUCCUUCUGGca
......(((...((((.((((.(((.(((((.((................))))))).))).)))).))))...)))

Structure

guuccu   guU    U    C   U     U  ugaagua 
      ugu   AAGG GCAU UAG GCAGU Ag       g
      |||   |||| |||| ||| ||||| ||        
      acG   UUCC CGUA AUC CGUCA uc       c
------   GUC    U    A   C     -  uaagauu

Annotation confidence Not enough data

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Genome context

KK088187.1: 4591575-4591651 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpi-mir-18b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-18b-5p

Accession	MIMAT0037640
Description	Chrysemys picta cpi-miR-18b-5p mature miRNA
Sequence	12 - UAAGGUGCAUCUAGUGCAGUUA - 33
Evidence	experimental Illumina [1]

Mature cpi-miR-18b-3p

Accession	MIMAT0037641
Description	Chrysemys picta cpi-miR-18b-3p mature miRNA
Sequence	53 - ACUGCCCUAAAUGCUCCUUCUGG - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196