miRBase entry: cpi-mir-19a

Stem-loop cpi-mir-19a

Accession

MI0029404

Description

Chrysemys picta cpi-mir-19a precursor miRNA

Sequence

uagcugcucugcaguccucuguuAGUUUUGCAUAGUUGCACUACAagaagaauguaguUGUGCAAAUCUAUGCAAAACUGaugguggccuguuauugucu
.....((...((((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).))))....))..

Structure

uagcu  -ucu    u  u                 --      ---    ag 
     gc    gcag cc cuguuAGUUUUGCAUAG  UUGCAC   UACA  a
     ||    |||| || |||||||||||||||||  ||||||   ||||  a
     ug    uguc gg gguaGUCAAAACGUAUC  AACGUG   augu  g
---uc  uuau    c  u                 UA      Uug    aa

Annotation confidence Not enough data

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Genome context

KK083096.1: 1396986-1397085 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpi-mir-19a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-19a-5p

Accession	MIMAT0037642
Description	Chrysemys picta cpi-miR-19a-5p mature miRNA
Sequence	24 - AGUUUUGCAUAGUUGCACUACA - 45
Evidence	experimental Illumina [1]

Mature cpi-miR-19a-3p

Accession	MIMAT0037643
Description	Chrysemys picta cpi-miR-19a-3p mature miRNA
Sequence	59 - UGUGCAAAUCUAUGCAAAACUG - 80
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196