miRBase entry: cpi-mir-19b-1

Stem-loop cpi-mir-19b-1

Accession

MI0029405

Description

Chrysemys picta cpi-mir-19b-1 precursor miRNA

Sequence

gaacacuguucucugguuAGUUUUGCAGGUUUGCAUCCagcuguaugauacucugcUGUGCAAAUCCAUGCAAAACUGacuguggcagugacaa
...(((((((...((((((((((((((((((((((..((((.............)))))))))).)).)))))))))))))).)))))))....

Structure

-gaa       cuc              -  -      UC    uguau 
    cacuguu   ugguuAGUUUUGCA GG UUUGCA  Cagc     g
    |||||||   |||||||||||||| || ||||||  ||||     a
    gugacgg   gucaGUCAAAACGU CC AAACGU  GUcg     u
aaca       --u              A  U      --    ucuca

Annotation confidence Not enough data

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Genome context

KK083096.1: 1396664-1396757 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpi-mir-19b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-19b-5p

Accession	MIMAT0037644
Description	Chrysemys picta cpi-miR-19b-5p mature miRNA
Sequence	19 - AGUUUUGCAGGUUUGCAUCC - 38
Evidence	experimental Illumina [1]

Mature cpi-miR-19b-3p

Accession	MIMAT0037645
Description	Chrysemys picta cpi-miR-19b-3p mature miRNA
Sequence	57 - UGUGCAAAUCCAUGCAAAACUG - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196