miRBase entry: cpi-mir-19b-2

Stem-loop cpi-mir-19b-2

Accession

MI0029406

Description

Chrysemys picta cpi-mir-19b-2 precursor miRNA

Sequence

aagauagugcugacuacagucAGUUUUGCAGGAUUGCAUUCCagcuuauuucaaacgcUGUGCAAAUCCAUGCAAAACUGacugugguugcauucauucg
..((((((((.(((((((((((((((((((((((((((...((((...........))))))).))))).)))))))))))))))))))))))).)))..

Structure

aa   -     u                   -     -   UUC    uuau 
  gau agugc gacuacagucAGUUUUGCA GGAUU GCA   Cagc    u
  ||| ||||| ||||||||||||||||||| ||||| |||   ||||    u
  uua uuacg uuggugucaGUCAAAACGU CCUAA CGU   GUcg    c
gc   c     -                   A     A   ---    caaa

Annotation confidence Not enough data

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Genome context

KK088187.1: 4591224-4591323 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpi-mir-19b-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-19b-3p

Accession	MIMAT0037645
Description	Chrysemys picta cpi-miR-19b-3p mature miRNA
Sequence	59 - UGUGCAAAUCCAUGCAAAACUG - 80
Evidence	experimental Illumina [1]

Mature cpi-miR-19b-2-5p

Accession	MIMAT0037646
Description	Chrysemys picta cpi-miR-19b-2-5p mature miRNA
Sequence	22 - AGUUUUGCAGGAUUGCAUUCC - 42
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196