miRBase entry: cpi-mir-20b

Stem-loop cpi-mir-20b

Accession

MI0029408

Description

Chrysemys picta cpi-mir-20b precursor miRNA

Sequence

uuuuguccuagcaguauCAAAGUGCUCAUAGUGCAGGUAguuuuugaauuggaucuACUGUAAUGUGGGCACUUAUAGUacugccagauaaaaug
(((((((...(((((((..(((((((((((.(((((.(((.(((......))).)))))))).)))))))))))...)))))))..)))))))..

Structure

--       cua       -CA           G     G   u   ug 
  uuuuguc   gcaguau   AAGUGCUCAUA UGCAG UAg uuu  a
  |||||||   |||||||   ||||||||||| ||||| ||| |||   
  aaaauag   cgucaUG   UUCACGGGUGU AUGUC Auc agg  a
gu       -ac       AUA           A     -   u   uu

Annotation confidence Not enough data

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Genome context

KK088187.1: 4591349-4591443 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpi-mir-20b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-20b-5p

Accession	MIMAT0037649
Description	Chrysemys picta cpi-miR-20b-5p mature miRNA
Sequence	18 - CAAAGUGCUCAUAGUGCAGGUA - 39
Evidence	experimental Illumina [1]

Mature cpi-miR-20b-3p

Accession	MIMAT0037650
Description	Chrysemys picta cpi-miR-20b-3p mature miRNA
Sequence	57 - ACUGUAAUGUGGGCACUUAUAGU - 79
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196