miRBase entry: cpi-mir-23a

Stem-loop cpi-mir-23a

Accession

MI0029411

Description

Chrysemys picta cpi-mir-23a precursor miRNA

Sequence

ccugccccugccagcugggguuccuggugaugcgauuuuuauccuaccacccaaaAUCACAUUGCCAGGGAUUUCCaacgggcggcgggcca
...(((((((((.(.(((((((((((((((((.((((((.............)))))).)))))))))))).))))).).))))).))))..

Structure

ccu    -     a c     -            c      uaucc 
   gccc cugcc g ugggg uuccuggugaug gauuuu     u
   |||| ||||| | ||||| |||||||||||| ||||||     a
   cggg ggcgg c aCCUU AGGGACCGUUAC CUAaaa     c
-ac    c     g a     U            A      cccac

Annotation confidence Not enough data

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Genome context

KK088216.1: 354537-354628 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-mir-23a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-23a-3p

Accession	MIMAT0037655
Description	Chrysemys picta cpi-miR-23a-3p mature miRNA
Sequence	56 - AUCACAUUGCCAGGGAUUUCC - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196