miRBase entry: cpi-mir-23b

Stem-loop cpi-mir-23b

Accession

MI0029412

Description

Chrysemys picta cpi-mir-23b precursor miRNA

Sequence

uaauguuguggcuguuuggguuccuggcaugcugauuugugauuuaagauuaaaAUCACAUUGCCAGGGAUUACCacauaaccaugacugu
....(((((((.(((.(((((((((((((((.((((((.(((((...))))))))))))).))))))))))..))).))).)))))))...

Structure

uaau       c   u   --          -  c      g     u 
    guugugg ugu ugg  guuccuggca ug ugauuu ugauu  
    ||||||| ||| |||  |||||||||| || |||||| ||||| a
    caguacc aua aCC  UAGGGACCGU AC ACUAaa auuag  
-ugu       a   c   AU          U  -      -     a

Annotation confidence Not enough data

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Genome context

KK088213.1: 2615768-2615858 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-mir-23b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-23b-3p

Accession	MIMAT0037656
Description	Chrysemys picta cpi-miR-23b-3p mature miRNA
Sequence	55 - AUCACAUUGCCAGGGAUUACC - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196