Stem-loop cpi-mir-24-1

Accession

MI0029413

Description

Chrysemys picta cpi-mir-24-1 precursor miRNA

Sequence

guugauggacccguccuccggUGCCUACUGAGCUGAUAUCAGUucugauuuuacauacUGGCUCAGUUCAGCAGGAACAggagucgagcccuaaa
......((.(.((..((((.((.(((.(((((((((..(((((..((......)).))))).))))))))).))).)).)))).)).).))....

Structure

guugau  a c  uc    g  G   A         UA     uc  au 
      gg c cg  cucc gU CCU CUGAGCUGA  UCAGU  ug  u
      || | ||  |||| || ||| |||||||||  |||||  ||   
      cc g gc  gagg CA GGA GACUUGACU  GGUca  ac  u
--aaau  c a  -u    A  A   C         -C     -u  au 

Annotation confidence Not enough data

Genome context

KK088213.1: 2616485-2616579 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-mir-24-1

Mature cpi-miR-24-5p

• Accession: MIMAT0037657
• Description: Chrysemys picta cpi-miR-24-5p mature miRNA
• Sequence: 22 - UGCCUACUGAGCUGAUAUCAGU - 43
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-24-3p

• Accession: MIMAT0037658
• Description: Chrysemys picta cpi-miR-24-3p mature miRNA
• Sequence: 59 - UGGCUCAGUUCAGCAGGAACA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196