miRBase entry: cpi-mir-24-2

Stem-loop cpi-mir-24-2

Accession

MI0029414

Description

Chrysemys picta cpi-mir-24-2 precursor miRNA

Sequence

cucccgggcucugccucccgUGCCUACUGAGCUGAUACUCAGUcgcuuugcuuaaacUGGCUCAGUUCAGCAGGAACAggagucgggcuccagcc
.....((((.(((.((((.((.(((.(((((((((...(((((............))))).))))))))).))).)).)))).))))))).....

Structure

cuccc    u   c    c  G   A         UAC     cgcuu 
     gggc cug cucc gU CCU CUGAGCUGA   UCAGU     u
     |||| ||| |||| || ||| |||||||||   |||||      
     cucg ggc gagg CA GGA GACUUGACU   GGUca     g
ccgac    -   u    A  A   C         --C     aauuc

Annotation confidence Not enough data

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Genome context

KK088216.1: 355115-355209 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-mir-24-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-24-3p

Accession	MIMAT0037658
Description	Chrysemys picta cpi-miR-24-3p mature miRNA
Sequence	58 - UGGCUCAGUUCAGCAGGAACA - 78
Evidence	experimental Illumina [1]

Mature cpi-miR-24-2-5p

Accession	MIMAT0037659
Description	Chrysemys picta cpi-miR-24-2-5p mature miRNA
Sequence	21 - UGCCUACUGAGCUGAUACUCAGU - 43
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196