miRBase entry: cpi-mir-27a

Stem-loop cpi-mir-27a

Accession

MI0029418

Description

Chrysemys picta cpi-mir-27a precursor miRNA

Sequence

gauaccggggugcAGGGCUUAGCUCACCUGUGAAcagaguucgcauccguaucgugUUCACAGUGGCUAAGUUCCGCcccccgggguccguu
(((.((((((.((.(((((((((.(((.((((((((..((.((....)).))..)))))))))))))))))))).)).)))))).)))....

Structure

----   a      u  A         U   C        ga  u  c 
    gau ccgggg gc GGGCUUAGC CAC UGUGAAca  gu cg a
    ||| |||||| || ||||||||| ||| ||||||||  || ||  
    cug ggcccc CG CUUGAAUCG GUG ACACUUgu  ua gc u
uugc   g      c  C         -   -        gc  u  c

Annotation confidence Not enough data

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Genome context

KK088216.1: 354904-354995 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-mir-27a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-27a-5p

Accession	MIMAT0037664
Description	Chrysemys picta cpi-miR-27a-5p mature miRNA
Sequence	14 - AGGGCUUAGCUCACCUGUGAA - 34
Evidence	experimental Illumina [1]

Mature cpi-miR-27a-3p

Accession	MIMAT0037665
Description	Chrysemys picta cpi-miR-27a-3p mature miRNA
Sequence	57 - UUCACAGUGGCUAAGUUCCGC - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196