miRBase entry: cpi-mir-29a-1

Stem-loop cpi-mir-29a-1

Accession

MI0029420

Description

Chrysemys picta cpi-mir-29a-1 precursor miRNA

Sequence

accccuuuagaggaugACUGAUUUCUUUUGGUGUUCAGAgucaauacuauuuucUAGCACCAUUUGAAAUCGGUUAuagugacuggggaauugcau
.((((.(((....((((((((((((...(((((((.((((...........)))))))))))...))))))))))))..)))..))))........

Structure

-------a    -u   gagg            UUU       C    ucaa 
        cccc  uua    augACUGAUUUC   UGGUGUU AGAg    u
        ||||  |||    ||||||||||||   ||||||| ||||    a
        gggg  agu    uAUUGGCUAAAG   ACCACGA Ucuu    c
uacguuaa    uc   --ga            UUU       -    uuau

Annotation confidence Not enough data

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Genome context

KK082943.1: 6076377-6076472 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-29a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-29a-5p

Accession	MIMAT0037668
Description	Chrysemys picta cpi-miR-29a-5p mature miRNA
Sequence	17 - ACUGAUUUCUUUUGGUGUUCAGA - 39
Evidence	experimental Illumina [1]

Mature cpi-miR-29a-3p

Accession	MIMAT0037669
Description	Chrysemys picta cpi-miR-29a-3p mature miRNA
Sequence	55 - UAGCACCAUUUGAAAUCGGUUA - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196