miRBase entry: cpi-mir-29b-1

Stem-loop cpi-mir-29b-1

Accession

MI0029422

Description

Chrysemys picta cpi-mir-29b-1 precursor miRNA

Literature search

1 open access papers mention cpi-mir-29b-1
(8 sentences)

Sequence

cucccucaggaagCUGGUUUCAUAUGGUGGUUUAGAuuuaacuacuccgugucUAGCACCAUUUGAAAUCAGUGuucuuggaggaagaaug
.(((.(((((((((((((((((.((((((..((((((.............)))))))))))).)))))))))).))))))).)))......

Structure

-----c   c       -          U      GU      uuaac 
      ucc ucaggaa gCUGGUUUCA AUGGUG  UUAGAu     u
      ||| ||||||| |||||||||| ||||||  ||||||     a
      agg gguucuu UGACUAAAGU UACCAC  GAUcug     c
guaaga   a       G          U      --      ugccu

Annotation confidence Not enough data

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Genome context

KK082943.1: 6077555-6077645 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-29b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-29b-5p

Accession	MIMAT0037671
Description	Chrysemys picta cpi-miR-29b-5p mature miRNA
Sequence	14 - CUGGUUUCAUAUGGUGGUUUAGA - 36
Evidence	experimental Illumina [1]

Mature cpi-miR-29b-3p

Accession	MIMAT0037672
Description	Chrysemys picta cpi-miR-29b-3p mature miRNA
Sequence	54 - UAGCACCAUUUGAAAUCAGUG - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196