miRBase entry: cpi-mir-30b

Stem-loop cpi-mir-30b

Accession

MI0029425

Description

Chrysemys picta cpi-mir-30b precursor miRNA

Sequence

uacugauuuuuaguucaUGUAAACAUCCUACACUCAGCUauaaaacauagaacggCUGGGAGGUGGAUGUUUACUUCaacugacuuggaaa
..((((...((((((...((((((((((.((.(((((((..............)))))))..))))))))))))...)))))).))))...

Structure

-ua    uuu      caU          U  -A       auaaaa 
   cuga   uuaguu   GUAAACAUCC AC  CUCAGCU      c
   ||||   ||||||   |||||||||| ||  |||||||       
   gguu   agucaa   CAUUUGUAGG UG  GGGUCgg      a
aaa    --c      CUU          -  GA       caagau

Annotation confidence Not enough data

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Genome context

KK088237.1: 13389201-13389291 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-30b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-30b-5p

Accession	MIMAT0037676
Description	Chrysemys picta cpi-miR-30b-5p mature miRNA
Sequence	18 - UGUAAACAUCCUACACUCAGCU - 39
Evidence	experimental Illumina [1]

Mature cpi-miR-30b-3p

Accession	MIMAT0037677
Description	Chrysemys picta cpi-miR-30b-3p mature miRNA
Sequence	56 - CUGGGAGGUGGAUGUUUACUUC - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196