miRBase entry: cpi-mir-30c-1

Stem-loop cpi-mir-30c-1

Accession

MI0029426

Description

Chrysemys picta cpi-mir-30c-1 precursor miRNA

Sequence

gccaugcuguagcaugUGUAAACAUCCUACACUCUCAGCUguggacucaagguagCUGGGAGAGGGUUGUUUACUCCuucugccauggacugaa
.(((((..((((...(.(((((((.(((...((((((((((((....))...)))))))))).))).))))))).)...)))))))))......

Structure

-----g     cu    cau U       U   ACA          ---  g 
      ccaug  guag   g GUAAACA CCU   CUCUCAGCUg   ug a
      |||||  ||||   | ||||||| |||   ||||||||||   ||  
      gguac  cguc   C CAUUUGU GGG   GAGGGUCgau   ac c
aaguca     --    uuC U       U   --A          gga  u

Annotation confidence Not enough data

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Genome context

chr19: 6120342-6120435 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-30c-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-30c-5p

Accession	MIMAT0037678
Description	Chrysemys picta cpi-miR-30c-5p mature miRNA
Sequence	17 - UGUAAACAUCCUACACUCUCAGCU - 40
Evidence	experimental Illumina [1]

Mature cpi-miR-30c-3p

Accession	MIMAT0037679
Description	Chrysemys picta cpi-miR-30c-3p mature miRNA
Sequence	56 - CUGGGAGAGGGUUGUUUACUCC - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196