miRBase entry: cpi-mir-30d

Stem-loop cpi-mir-30d

Accession

MI0029428

Description

Chrysemys picta cpi-mir-30d precursor miRNA

Sequence

uauuguagucuguuguUGUAAACAUCCCCGACUGGAAGCuguaagagaaauucuagCUUUCAGUCAGAUGUUUGCUGCauccggcuauucaugg
....((((((.(.(((.(((((((((...((((((((((((.((......)).)))))))))))).))))))))).))).).))))))......

Structure

--uauu      u u   U         CCC            u  ga 
      guaguc g ugu GUAAACAUC   GACUGGAAGCug aa  g
      |||||| | ||| |||||||||   |||||||||||| ||   
      uaucgg c aCG CGUUUGUAG   CUGACUUUCgau uu  a
gguacu      c u   U         --A            c  aa

Annotation confidence Not enough data

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Genome context

KK088237.1: 13381534-13381627 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-30d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-30d-5p

Accession	MIMAT0037681
Description	Chrysemys picta cpi-miR-30d-5p mature miRNA
Sequence	17 - UGUAAACAUCCCCGACUGGAAGC - 39
Evidence	experimental Illumina [1]

Mature cpi-miR-30d-3p

Accession	MIMAT0037682
Description	Chrysemys picta cpi-miR-30d-3p mature miRNA
Sequence	57 - CUUUCAGUCAGAUGUUUGCUGC - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196