miRBase entry: cpi-mir-30e

Stem-loop cpi-mir-30e

Accession

MI0029429

Description

Chrysemys picta cpi-mir-30e precursor miRNA

Sequence

gggcagucguugcuacUGUAAACAUCCUUGACUGGAAGCUguaaggugcuagaagggagCUUUCAGUCGGAUGUUUACAGCggcaggcugccacag
.(((((((..((((.((((((((((((..(((((((((((.(.............).))))))))))))))))))))))).)))))))))))....

Structure

---g       gu    a            UU           g aaggu 
    ggcaguc  ugcu cUGUAAACAUCC  GACUGGAAGCU u     g
    |||||||  |||| ||||||||||||  ||||||||||| |     c
    ccgucgg  acgg GACAUUUGUAGG  CUGACUUUCga g     u
gaca       --    C            --           g gaaga

Annotation confidence Not enough data

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Genome context

chr19: 6116256-6116351 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-30e

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-30e-5p

Accession	MIMAT0037683
Description	Chrysemys picta cpi-miR-30e-5p mature miRNA
Sequence	17 - UGUAAACAUCCUUGACUGGAAGCU - 40
Evidence	experimental Illumina [1]

Mature cpi-miR-30e-3p

Accession	MIMAT0037684
Description	Chrysemys picta cpi-miR-30e-3p mature miRNA
Sequence	60 - CUUUCAGUCGGAUGUUUACAGC - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196