miRBase entry: cpi-mir-34b

Stem-loop cpi-mir-34b

Accession

MI0029435

Description

Chrysemys picta cpi-mir-34b precursor miRNA

Sequence

gaaguaguguuugguuuguAGGCAGUGUAGUUAGCUGAUUGuauccaucucuuugcaAUCACUAACUUUACUGCCAUCaaaacaagacacagaauucc
(((...((((((.((((...(((((((.((((((.((((((((..........)))))))))))))).)))))))....)))).))))))....))).

Structure

-   -gua      g    -guA       U      C        ucca 
 gaa    guguuu guuu    GGCAGUG AGUUAG UGAUUGua    u
 |||    |||||| ||||    ||||||| |||||| ||||||||     
 cuu    cacaga caaa    CCGUCAU UCAAUC ACUAacgu    c
c   aaga      a    aCUA       U      -        uucu

Annotation confidence Not enough data

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Genome context

KK083019.1: 1773044-1773141 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-34b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-34b-5p

Accession	MIMAT0037694
Description	Chrysemys picta cpi-miR-34b-5p mature miRNA
Sequence	20 - AGGCAGUGUAGUUAGCUGAUUG - 41
Evidence	experimental Illumina [1]

Mature cpi-miR-34b-3p

Accession	MIMAT0037695
Description	Chrysemys picta cpi-miR-34b-3p mature miRNA
Sequence	58 - AUCACUAACUUUACUGCCAUC - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196