miRBase entry: cpi-mir-34c

Stem-loop cpi-mir-34c

Accession

MI0029436

Description

Chrysemys picta cpi-mir-34c precursor miRNA

Sequence

acauuagccuaguuaccAGGCAGUGUAGUUAGCUGAUUGCuaaagguacAAUCACUAACCACACAGCCAgguaaaaagguauguaa
((((..((((..(((((.(((.((((.(((((.((((((.........))))))))))).)))).))).)))))..))))))))..

Structure

--    ua    ag     A   A    A     C      Cua 
  acau  gccu  uuacc GGC GUGU GUUAG UGAUUG   a
  ||||  ||||  ||||| ||| |||| ||||| ||||||   a
  ugua  ugga  aaugg CCG CACA CAAUC ACUAAc   g
aa    --    aa     A   A    C     -      aug

Annotation confidence Not enough data

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Genome context

KK083019.1: 1772337-1772422 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-34c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-34c-5p

Accession	MIMAT0037696
Description	Chrysemys picta cpi-miR-34c-5p mature miRNA
Sequence	18 - AGGCAGUGUAGUUAGCUGAUUGC - 40
Evidence	experimental Illumina [1]

Mature cpi-miR-34c-3p

Accession	MIMAT0037697
Description	Chrysemys picta cpi-miR-34c-3p mature miRNA
Sequence	50 - AAUCACUAACCACACAGCCA - 69
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196