miRBase entry: cpi-mir-92b

Stem-loop cpi-mir-92b

Accession

MI0029439

Description

Chrysemys picta cpi-mir-92b precursor miRNA

Sequence

uccagggcagcaggAGGGACGGGAUGCUGUGCAGUGUUguucuaucaccaaccaaUAUUGCACUCGUCCCGGCCUCCugccuccuugggcu
.((((((..((((((((..(((((((..(((((((((((.............))))))))))).))))))).))))))))..))))))...

Structure

--u      ca        GA       CU           uucua 
   ccaggg  gcaggAGG  CGGGAUG  GUGCAGUGUUg     u
   ||||||  ||||||||  |||||||  |||||||||||     c
   gguucc  cguCCUCC  GCCCUGC  CACGUUAUaac     a
ucg      uc        -G       -U           caacc

Annotation confidence Not enough data

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Genome context

KK083007.1: 2872428-2872518 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-92b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-92b-5p

Accession	MIMAT0037701
Description	Chrysemys picta cpi-miR-92b-5p mature miRNA
Sequence	15 - AGGGACGGGAUGCUGUGCAGUGUU - 38
Evidence	experimental Illumina [1]

Mature cpi-miR-92b-3p

Accession	MIMAT0037702
Description	Chrysemys picta cpi-miR-92b-3p mature miRNA
Sequence	56 - UAUUGCACUCGUCCCGGCCUCC - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196