miRBase entry: cpi-mir-93

Stem-loop cpi-mir-93

Accession

MI0029441

Description

Chrysemys picta cpi-mir-93 precursor miRNA

Sequence

ucccagaggcucCAAAGUGCUGUUCGUGCAGGUagcgugugcagccgacuACUGCCGAGUCAGCGCUUCGCgagccccccggaca
(((..(.((((((.((((((((((((.((((.(((((.((...)))).))))))))))).)))))))).).))))).)..)))..

Structure

--   ca a     - A        -    U    G   -  u  g 
  ucc  g ggcuc C AAGUGCUG UUCG GCAG Uag cg gu  
  |||  | ||||| | |||||||| |||| |||| ||| || || c
  agg  c ccgag G UUCGCGAC GAGC CGUC Auc gc cg  
ac   cc c     C C        U    -    -   a  -  a

Annotation confidence Not enough data

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Genome context

KK083587.1: 75643-75727 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-93

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-93-5p

Accession	MIMAT0037705
Description	Chrysemys picta cpi-miR-93-5p mature miRNA
Sequence	13 - CAAAGUGCUGUUCGUGCAGGU - 33
Evidence	experimental Illumina [1]

Mature cpi-miR-93-3p

Accession	MIMAT0037706
Description	Chrysemys picta cpi-miR-93-3p mature miRNA
Sequence	51 - ACUGCCGAGUCAGCGCUUCGC - 71
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196