miRBase entry: cpi-mir-96

Stem-loop cpi-mir-96

Accession

MI0029442

Description

Chrysemys picta cpi-mir-96 precursor miRNA

Sequence

uaucucugcuucgcccggUUUGGCACUAGCACAUUUUUGCuuuuguauaacuacuuugagcaauuauguguagugccaaucugggagaagacggaagu
....((((((((.(((((.(((((((((.(((((..((((((..(((....)))...))))))..)))))))))))))).))))).)))).))))...

Structure

uauc    -    g     U         G     UU      -uu   u 
    ucug cuuc cccgg UUGGCACUA CACAU  UUGCuu   gua a
    |||| |||| ||||| ||||||||| |||||  ||||||   |||  
    aggc gaag ggguc aaccgugau gugua  aacgag   cau a
-uga    a    a     u         -     uu      uuu   c

Annotation confidence Not enough data

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Genome context

KK083104.1: 1276766-1276863 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-96

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-96-5p

Accession	MIMAT0037707
Description	Chrysemys picta cpi-miR-96-5p mature miRNA
Sequence	19 - UUUGGCACUAGCACAUUUUUGC - 40
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196