miRBase entry: cpi-mir-98

Stem-loop cpi-mir-98

Accession

MI0029443

Description

Chrysemys picta cpi-mir-98 precursor miRNA

Sequence

ggaUGAGGUAGUACGUUGUAUUGUUguggggucgggauucgugccccaaucagagauaaCAAUACAACUUACUACUUUCCc
(((..((((((((.((((((((((((((((((((.....)).))))))........)))))))))))).))))))))))).

Structure

-   UG        C            --------      -  g 
 gga  AGGUAGUA GUUGUAUUGUUg        uggggu cg g
 |||  |||||||| ||||||||||||        |||||| || a
 CCU  UUCAUCAU CAACAUAACaau        accccg gc u
c   --        U            agagacua      u  u

Annotation confidence Not enough data

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Genome context

KK083246.1: 398069-398149 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-98

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-98-5p

Accession	MIMAT0037708
Description	Chrysemys picta cpi-miR-98-5p mature miRNA
Sequence	4 - UGAGGUAGUACGUUGUAUUGUU - 25
Evidence	experimental Illumina [1]

Mature cpi-miR-98-3p

Accession	MIMAT0037709
Description	Chrysemys picta cpi-miR-98-3p mature miRNA
Sequence	60 - CAAUACAACUUACUACUUUCC - 80
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196