miRBase entry: cpi-mir-99a

Stem-loop cpi-mir-99a

Accession

MI0029444

Description

Chrysemys picta cpi-mir-99a precursor miRNA

Sequence

uggugccaauuggcauaAACCCGUAGAUCCGAUCUUGUGguaaaguauacugcaCAAGCUCGCUUCUAUGGGUCUGugucacucuggugaucu
.(((((((..(((((((.(((((((((..(((.((((((.............)))))).)))..))))))))).)))))))...)))).))).

Structure

u   -    -au       A         UC   U      guaaa 
 ggu gcca   uggcaua ACCCGUAGA  CGA CUUGUG     g
 ||| ||||   ||||||| |||||||||  ||| ||||||     u
 cua uggu   acuguGU UGGGUAUCU  GCU GAACac     a
u   g    cuc       C         UC   C      gucau

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

KK088228.1: 9002704-9002796 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-99a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-99a-5p

Accession	MIMAT0037710
Description	Chrysemys picta cpi-miR-99a-5p mature miRNA
Sequence	18 - AACCCGUAGAUCCGAUCUUGUG - 39
Evidence	experimental Illumina [1]

Mature cpi-miR-99a-3p

Accession	MIMAT0037711
Description	Chrysemys picta cpi-miR-99a-3p mature miRNA
Sequence	55 - CAAGCUCGCUUCUAUGGGUCUG - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196