Stem-loop cpi-mir-101-1

Accession

MI0029447

Description

Chrysemys picta cpi-mir-101-1 precursor miRNA

Sequence

acugacaggcugcccuggcUCAGUUAUCACAGUGCUGAUGCUgucuauucuaaaggUACAGUACUGUGAUAACUGAAGgauggcagccaucuuagc
.((((..(((((((.....((((((((((((((((((.((((............)))))))))))))))))))))).....)))))))...)))).

Structure

a    -ca       cuggc                  A    gucua 
 cuga   ggcugcc     UCAGUUAUCACAGUGCUG UGCU     u
 ||||   |||||||     |||||||||||||||||| ||||      
 gauu   ccgacgg     AGUCAAUAGUGUCAUGAC AUgg     u
c    cua       uagGA                  -    aaauc 

Annotation confidence Not enough data

Genome context

chr8: 38837677-38837772 [-]

Mature cpi-miR-101-5p

• Accession: MIMAT0037716
• Description: Chrysemys picta cpi-miR-101-5p mature miRNA
• Sequence: 20 - UCAGUUAUCACAGUGCUGAUGCU - 42
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-101-3p

• Accession: MIMAT0037717
• Description: Chrysemys picta cpi-miR-101-3p mature miRNA
• Sequence: 57 - UACAGUACUGUGAUAACUGAAG - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196