miRBase entry: cpi-mir-106a

Stem-loop cpi-mir-106a

Accession

MI0029451

Description

Chrysemys picta cpi-mir-106a precursor miRNA

Sequence

ugaguugugcAAAAGUGCUUACAGUGCAGGUAGuguguugguaucuacugcaguggaagcacuucuagcauuacaaug
...((.((((..(((((((..((.(((((.(((...........)))))))).))..)))))))...)))).))....

Structure

-uga  u    -AA       UA  G     G   ugug 
    gu gugc   AAGUGCU  CA UGCAG UAG    u
    || ||||   |||||||  || ||||| |||    u
    ca uacg   uucacga  gu acguc auc    g
guaa  u    auc       ag  g     -   uaug

Annotation confidence Not enough data

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Genome context

KK088187.1: 4591728-4591805 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpi-mir-106a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-106a-5p

Accession	MIMAT0037721
Description	Chrysemys picta cpi-miR-106a-5p mature miRNA
Sequence	11 - AAAAGUGCUUACAGUGCAGGUAG - 33
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196