Stem-loop cpi-mir-128-1

Accession

MI0029463

Description

Chrysemys picta cpi-mir-128-1 precursor miRNA

Sequence

uugugagcuguuggauuCGGGGCCGUAACACUGUCUGAGAggguuacauuucUCACAGUGAACCGGUCUCUUUuucagcugcuuccucg
....((((.((((((...(((((((...((((((..((((((......))))))))))))...)))))))...)))))).)))).....

Structure

-uugu    u      uuC       UAA      CU      gu 
     gagc guugga   GGGGCCG   CACUGU  GAGAgg  u
     |||| ||||||   |||||||   ||||||  ||||||   
     uucg cgacuu   CUCUGGC   GUGACA  CUcuuu  a
gcucc    u      UUU       CAA      --      ac 

Annotation confidence Not enough data

Genome context

chr4: 4504710-4504798 [+]

Mature cpi-miR-128-5p

• Accession: MIMAT0037735
• Description: Chrysemys picta cpi-miR-128-5p mature miRNA
• Sequence: 18 - CGGGGCCGUAACACUGUCUGAGA - 40
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-128-3p

• Accession: MIMAT0037736
• Description: Chrysemys picta cpi-miR-128-3p mature miRNA
• Sequence: 53 - UCACAGUGAACCGGUCUCUUU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196