Stem-loop cpi-mir-129-2

Accession

MI0029466

Description

Chrysemys picta cpi-mir-129-2 precursor miRNA

Sequence

guccuucgcgaauCUUUUUGCGGUCUGGGCUUGCuguauauaacuaccuagccgggAAGCCCUUACCCCAAAAAGCAuucgcggaggg
..((((((((((((((((((.(((..((((((.(((..((........))..))).))))))..))).))))))).))))))))))).

Structure

gu           -       C   CU      G   ua  uaa 
  ccuucgcgaau CUUUUUG GGU  GGGCUU Cug  ua   c
  ||||||||||| ||||||| |||  |||||| |||  ||    
  ggaggcgcuuA GAAAAAC CCA  CCCGAA ggc  au   u
-g           C       C   UU      g   cg  cca 

Annotation confidence Not enough data

Genome context

chr4: 24483318-24483405 [+]

Mature cpi-miR-129-5p

• Accession: MIMAT0037738
• Description: Chrysemys picta cpi-miR-129-5p mature miRNA
• Sequence: 14 - CUUUUUGCGGUCUGGGCUUGC - 34
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-129-2-3p

• Accession: MIMAT0037740
• Description: Chrysemys picta cpi-miR-129-2-3p mature miRNA
• Sequence: 57 - AAGCCCUUACCCCAAAAAGCA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196