miRBase entry: cpi-mir-130b

Stem-loop cpi-mir-130b

Accession

MI0029468

Description

Chrysemys picta cpi-mir-130b precursor miRNA

Sequence

caggcaggcugccACUCUUUCCCUGUUGCACUACUguuaaacuuguagcuagCAGUGCAAUAAUGAAAGGGCGUcggucugccag
..(((((((((.(.(((((((..(((((((((.((((((......)))).)).)))))))))..))))))).).)))))))))..

Structure

ca         c A       CC         A  -    aa 
  ggcaggcug c CUCUUUC  UGUUGCACU CU guua  c
  ||||||||| | |||||||  ||||||||| || ||||   
  ccgucuggc G GGGAAAG  AUAACGUGA ga cgau  u
ga         U C       UA         C  u    gu

Annotation confidence Not enough data

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Genome context

KK082934.1: 2426342-2426426 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cpi-mir-130b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-130b-5p

Accession	MIMAT0037743
Description	Chrysemys picta cpi-miR-130b-5p mature miRNA
Sequence	14 - ACUCUUUCCCUGUUGCACUACU - 35
Evidence	experimental Illumina [1]

Mature cpi-miR-130b-3p

Accession	MIMAT0037744
Description	Chrysemys picta cpi-miR-130b-3p mature miRNA
Sequence	53 - CAGUGCAAUAAUGAAAGGGCGU - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196