miRBase entry: cpi-mir-130d

Stem-loop cpi-mir-130d

Accession

MI0029470

Description

Chrysemys picta cpi-mir-130d precursor miRNA

Sequence

aguggugucuguccagugcccuuuuuauguuguacuacuagugaucauacacaaaaagcAGUGCAAUGUUAAAAGGGCAUUggccagugauacuguc
...((((((((.(((((((((((((.((((((((((.((.(((......)))....)).)))))))))).))))))))))))).))..))))))...

Structure

agu      --  u             u          a  ---a   au 
   gguguc  ug ccagugcccuuuu auguuguacu cu    gug  c
   ||||||  || ||||||||||||| |||||||||| ||    |||   
   ucauag  ac ggUUACGGGAAAA UGUAACGUGA ga    cac  a
cug      ug  c             U          c  aaaa   au

Annotation confidence Not enough data

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Genome context

KK088184.1: 246998-247094 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-130d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-130d-3p

Accession	MIMAT0037747
Description	Chrysemys picta cpi-miR-130d-3p mature miRNA
Sequence	60 - AGUGCAAUGUUAAAAGGGCAUU - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196