miRBase entry: cpi-mir-133a-1

Stem-loop cpi-mir-133a-1

Accession

MI0029472

Description

Chrysemys picta cpi-mir-133a-1 precursor miRNA

Sequence

uccaaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUcaccucuucaauggaUUUGGUCCCCUUCAACCAGCUGUagcuaugcauugau
..((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...))))))..

Structure

uc      uuu    a       AA  U  A        accuc 
  caaugc   gcua AGCUGGU  AA GG ACCAAAUc     u
  ||||||   |||| |||||||  || || ||||||||      
  guuacg   cgaU UCGACCA  UU CC UGGUUUag     u
ua      uau    G       AC  C  C        guaac

Annotation confidence Not enough data

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Genome context

KK088180.1: 6514695-6514784 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-133a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-133a-5p

Accession	MIMAT0037750
Description	Chrysemys picta cpi-miR-133a-5p mature miRNA
Sequence	17 - AGCUGGUAAAAUGGAACCAAAU - 38
Evidence	experimental Illumina [1]

Mature cpi-miR-133a-3p

Accession	MIMAT0037751
Description	Chrysemys picta cpi-miR-133a-3p mature miRNA
Sequence	54 - UUUGGUCCCCUUCAACCAGCUGU - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196