miRBase entry: cpi-mir-133b

Stem-loop cpi-mir-133b

Accession

MI0029474

Description

Chrysemys picta cpi-mir-133b precursor miRNA

Sequence

aggggcugcacccugcucuggcuggucaaacggaaccaaguccgucuuccuuggaggUUUGGUCCCCUUCAACCAGCUacagcagugcugaaauc
.......((((..((((.((((((((..((.((.((((((.((.((......)).)))))))).)).))..)))))))).)))))))).......

Structure

aggggcu    cc    c        ca  c  a      u  g  uu 
       gcac  ugcu uggcuggu  aa gg accaag cc uc  c
       ||||  |||| ||||||||  || || |||||| || ||   
       cgug  acga aUCGACCA  UU CC UGGUUU gg gg  c
cuaaagu    --    c        AC  C  C      -  a  uu

Annotation confidence Not enough data

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Genome context

KK088210.1: 11559703-11559797 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-133b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-133b-3p

Accession	MIMAT0037752
Description	Chrysemys picta cpi-miR-133b-3p mature miRNA
Sequence	58 - UUUGGUCCCCUUCAACCAGCU - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196