miRBase entry: cpi-mir-133c

Stem-loop cpi-mir-133c

Accession

MI0029475

Description

Chrysemys picta cpi-mir-133c precursor miRNA

Sequence

cuggagagagugugucccuggggcugguaaaaaggaaccagaucaacuuggaacuggaUUUGGUCCCCUUCAACCAGCUGcaguggcgcauacgccagcc
((((.(...(((((((.(((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))).))))))).).))))..

Structure

--    a aga       c   g       aa  a  a        aacuu 
  cugg g   guguguc cug ggcuggu  aa gg accagauc     g
  |||| |   ||||||| ||| |||||||  || || ||||||||      
  gacc c   uacgcgg gac UCGACCA  UU CC UGGUUUag     g
cc    g --a       u   G       AC  C  C        gucaa

Annotation confidence Not enough data

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Genome context

chr19: 4211024-4211123 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-133c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-133c-3p

Accession	MIMAT0037753
Description	Chrysemys picta cpi-miR-133c-3p mature miRNA
Sequence	59 - UUUGGUCCCCUUCAACCAGCUG - 80
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196